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Automated Nucleus Segmentation in Histology Images: An Attention U-Net Approach with Comprehensive Preprocessing and Inference Pipelines

Summary

This study applies a lightweight Attention U-Net on the MoNuSeg 2018 dataset, combining stain deconvolution and multi-pass mask smoothing with overlapping patch stitching, achieving an IoU of 0.8745 on full-resolution unseen test images and demonstrating the value of attention mechanisms and stitching in digital pathology.

SourcearXiv Computer VisionAuthor: Akshat G, Divyansh Gupta, Tusar Kanti Mishra
Automated Nucleus Segmentation in Histology Images: An Attention U-Net Approach with Comprehensive Preprocessing and Inference Pipelines
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[Submitted on 22 Oct 2026]

Title:Automated Nucleus Segmentation in Histology Images: An Attention U-Net Approach with Comprehensive Preprocessing and Inference Pipelines

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Abstract:Objectives: In the area of digital pathology, nucleus segmentation is an essential step for quantitative analysis; however, high nuclear density and staining heterogeneity in histology images pose a great challenge.

Methods: This study implements a lightweight Attention U-Net model on the MoNuSeg 2018 dataset to overcome these challenges. The proposed pipeline integrates comprehensive image and mask preprocessing, including stain deconvolution and multi-pass mask smoothing, with a high-fidelity overlapping patch-stitching strategy during inference on high-resolution images.

Results: The model achieved an Intersection over Union (IoU) score of 0.8745 on full-resolution, unseen test images. This result demonstrates the effectiveness of attention mechanisms in enhancing feature localization and validates the stitching methodology for generating seamless and accurate segmentation maps.

Conclusion: Attention U-Net is an effective and competitive method for automated, scalable nucleus delineation in challenging clinical contexts.

Comments: 8 pages, 8 figures

Subjects:

Computer Vision and Pattern Recognition (cs.CV)

Cite as: arXiv:2610.31902 [cs.CV]

(or arXiv:2610.31902v1 [cs.CV] for this version)

https://doi.org/10.48550/arXiv.2610.31902

arXiv-issued DOI via DataCite (pending registration)

Submission history

From: Akshat Gururaj [view email] [v1] Thu, 22 Oct 2026 20:57:54 UTC (6,360 KB)

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Key points

  • A lightweight Attention U-Net achieves IoU 0.8745 on full-resolution unseen test images from MoNuSeg 2018
  • Preprocessing includes stain deconvolution and multi-pass mask smoothing to address staining heterogeneity and high nuclear density
  • Inference uses high-fidelity overlapping patch stitching to produce seamless, accurate segmentation maps

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