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Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation

Summary

This paper introduces the Hierarchical Multi-view HAAR (HMH) framework for heterophilous graph classification. HMH learns signed affinities via a heterophily-aware encoder, constructs a soft graph hierarchy, and applies sparse orthonormal Haar wavelet bases for spectral filtering at each level, effectively mitigating hub-dominated aggregation, oversmoothing, and oversquashing. Experiments show up to 3% improvement on node classification and 7% points on graph classification while maintaining near-linear scalability.

SourcearXiv Machine LearningAuthor: Md Sazzad Hossen, Avimanyu Sahoo
Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation
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[2605.10975] Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation

[Submitted on 8 May 2026]

Title:Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation

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Abstract:Graphs with heterophily, where adjacent nodes carry different labels, are prevalent in real-world applications, from social networks to molecular interactions. However, existing spectral Graph Neural Network (GNN) approaches tailored for heterophilous graph classification suffer from hub-dominated (node with large degree) aggregation and oversmoothing, as their suboptimal polynomial filters introduce approximation errors and blend distant signals. To address the degree-biased aggregation and suboptimal polynomial filtering, we introduce a Hierarchical Multi-view HAAR (HMH), a novel spectral graph-learning framework that scales in near-linear time . HMH first learns feature- and structure-aware signed affinities via a heterophily-aware encoder, then constructs a soft graph hierarchy guided by these embeddings. At each hierarchical level, HMH constructs a sparse, orthonormal, and locality-aware Haar basis to apply learnable spectral filters in the frequency domain. Finally, skip-connection unpooling layers combine outputs from all hierarchical levels back into the original graph, effectively preventing hub domination and long-range signal bottleneck (over-squashing). Experimentation shows that HMH outperforms state-of-the-art spectral baselines, achieving up to a 3% improvement on node classification and 7% points on graph classification datasets, all while maintaining linear scalability.

Subjects:

Machine Learning (cs.LG); Artificial Intelligence (cs.AI)

Cite as: arXiv:2605.10975 [cs.LG]

(or arXiv:2605.10975v1 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2605.10975

arXiv-issued DOI via DataCite

Submission history

From: MD Sazzad Hossen [view email] [v1] Fri, 8 May 2026 22:35:17 UTC (5,779 KB)

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Key points

  • Proposes HMH framework to address hub-dominated aggregation and oversmoothing in heterophilous graphs
  • Learns signed affinities using a heterophily-aware encoder and builds a soft graph hierarchy
  • Applies sparse orthonormal Haar bases for spectral filtering at each level with skip-connection unpooling
  • Achieves up to 3% and 7% point improvements on node and graph classification, respectively, with near-linear scalability

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