Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model
A study evaluated LLaMA 3.1 for extracting structured data from Dutch brain MRI reports. The model showed high performance on categorical variables like visual rating scores but lower performance on numerical variables. Few-shot prompting improved numerical extraction accuracy significantly.
[2606.07721] Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model
[Submitted on 5 Jun 2026]
Title:Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model
View a PDF of the paper titled Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model, by Kaouther Mouheb and 11 other authors
View PDF
Abstract:Objectives: Automatic data extraction from free-text radiology reports enables large-scale research, but few studies assessed the performance of large language models (LLMs) on Dutch neuroradiology reports. Methods: We analyzed 947 brain MRI reports from a tertiary memory clinic (2016-2021), authored by consultant neuroradiologists. Trained medical students annotated thirty variables; 100 reports were double-annotated to assess inter-rater reliability. We evaluated the performance of the open-weight LLM LLaMA 3.1 using different languages (Dutch vs. English translation) and few-shot prompting with different example selection strategies. Performance was evaluated using balanced accuracy for categorical variables, accuracy and mean absolute error for counts, and text similarity for free-text. Metrics were computed across 10 random splits of the 947 reports. Results: LLaMA 3.1 demonstrated high zero-shot performance for visual rating scores (mean [95%-CI]): Medial Temporal Atrophy: 90% [77-100%] on the left and 96% [94-99%] on the right, Global Cortical Atrophy: 87% [83-91%], and Fazekas: 94% [93-96%]. Microbleed mentions were detected with 93% accuracy [92-95%] and infarct mentions with 82% [80-84%]. Text similarity for lesion location reached 0.95 [0.95-0.96]. Performance was lower for numerical variables: 80% [78-82%] for the number of microbleeds and 66% [63-68%] for infarcts. English translation yielded comparable results. Few-shot prompting improved performance for numerical variables, achieving 92% [90-93%] for microbleeds and 81% [77-85%] for infarcts using structural similarity-based selection. Conclusion: LLaMA 3.1 shows strong potential for extracting data from Dutch neuroradiology reports. Few-shot prompting enhances performance for numerical variables, whereas challenges remain for location-specific variables.
Comments: Submitted to European Radiology
Subjects:
Artificial Intelligence (cs.AI)
Cite as: arXiv:2606.07721 [cs.AI]
(or arXiv:2606.07721v1 [cs.AI] for this version)
https://doi.org/10.48550/arXiv.2606.07721
arXiv-issued DOI via DataCite (pending registration)
Submission history
From: Kaouther Mouheb [view email] [v1] Fri, 5 Jun 2026 15:57:35 UTC (6,056 KB)
Full-text links:
Access Paper:
View a PDF of the paper titled Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model, by Kaouther Mouheb and 11 other authors
View PDF
view license
Current browse context:
cs.AI
new | recent | 2026-06
Change to browse by:
cs
References & Citations
NASA ADS
Google Scholar
Semantic Scholar
Loading...
Data provided by:
Bibliographic Tools
Bibliographic and Citation Tools
Bibliographic Explorer Toggle
Bibliographic Explorer (What is the Explorer?)
Connected Papers Toggle
Connected Papers (What is Connected Papers?)
Litmaps Toggle
Litmaps (What is Litmaps?)
scite.ai Toggle
scite Smart Citations (What are Smart Citations?)
Code, Data, Media
Code, Data and Media Associated with this Article
alphaXiv Toggle
alphaXiv (What is alphaXiv?)
Links to Code Toggle
CatalyzeX Code Finder for Papers (What is CatalyzeX?)
DagsHub Toggle
DagsHub (What is DagsHub?)
GotitPub Toggle
Gotit.pub (What is GotitPub?)
Huggingface Toggle
Hugging Face (What is Huggingface?)
ScienceCast Toggle
ScienceCast (What is ScienceCast?)
Demos
Demos
Replicate Toggle
Replicate (What is Replicate?)
Spaces Toggle
Hugging Face Spaces (What is Spaces?)
Spaces Toggle
TXYZ.AI (What is TXYZ.AI?)
Related Papers
Recommenders and Search Tools
Link to Influence Flower
Influence Flower (What are Influence Flowers?)
Core recommender toggle
CORE Recommender (What is CORE?)
Author
Venue
Institution
Topic
About arXivLabs
arXivLabs: experimental projects with community collaborators
arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website.
Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them.
Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.
Which authors of this paper are endorsers? | Disable MathJax (What is MathJax?)